Genome Sequence and Methylation Patterns of Halorubrum sp. Strain BOL3-1, the First Haloarchaeon Isolated and Cultured from Salar de Uyuni, Bolivia-Reference-Cited by-同舟云学术

Genome Sequence and Methylation Patterns of Halorubrum sp. Strain BOL3-1, the First Haloarchaeon Isolated and Cultured from Salar de Uyuni, Bolivia

Published:2019-05-09 Issue:19 Volume:8 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

DasSarma Priya¹,Anton Brian P.²,DasSarma Satyajit¹,Laye Victoria J.¹,Guzman Daniel³,Roberts Richard J.²,DasSarma Shiladitya¹

Affiliation:

1. Department of Microbiology and Immunology, Institute of Marine and Environmental Technology, University of Maryland School of Medicine, Baltimore, Maryland, USA

2. New England Biolabs, Ipswich, Massachusetts, USA

3. Centro de Biotecnología, Faculty of Sciences and Technology, Universidad Mayor de San Simón, Cochabamba, Bolivia

Abstract

Halorubrum sp. strain BOL3-1 was isolated from Salar de Uyuni, Bolivia, and sequenced using single-molecule real-time sequencing. Its 3.7-Mbp genome was analyzed for gene content and methylation patterns and incorporated into the Haloarchaeal Genomes Database ( http://halo.umbc.edu ).

Funder

National Aeronautics and Space Administration

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00386-19

Reference18 articles.

1. Distribution, salinity and pH dependence of elements in surface waters of the catchment areas of the Salars of Coipasa and Uyuni, Bolivian Altiplano

2. Terrestrial models for extraterrestrial life: methanogens and halophiles at Martian temperatures

3. Ng WL, Yang CF, Halladay JT, Arora P, DasSarma S. 1995. Isolation of genomic and plasmid DNAs from Halobacterium halobium, p 179–184. In DasSarma S, Fleischmann EM (ed), Archaea, a laboratory manual: halophiles. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

4. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

5. EMBOSS Explorer. http://www.bioinformatics.nl/cgi-bin/emboss/. Accessed 21 February 2019.

Cited by 8 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Genomic Analysis of Haloarchaea from Diverse Environments, including Permian Halite, Reveals Diversity of Ultraviolet Radiation Survival and DNA Photolyase Gene Variants;Microorganisms;2023-02-28

2. Genome Sequence of Halobacterium sp. Strain BOL4-2, Isolated and Cultured from Salar de Uyuni, Bolivia;Microbiology Resource Announcements;2021-12-02

3. Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, an Extremely Halophilic Archaeon from a Bolivian Salt Mine;Microbiology Resource Announcements;2021-05-06

4. Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management;Frontiers in Microbiology;2021-03-22

5. Lithifying and Non-Lithifying Microbial Ecosystems in the Wetlands and Salt Flats of the Central Andes;Microbial Ecology;2021-03-17