Metagenome-assembled genomes from sugarcane mill mud-Reference-Cited by-同舟云学术

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Metagenome-assembled genomes from sugarcane mill mud

Published:2023-11-16 Issue:11 Volume:12 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Uchimiya Minori¹^ORCID,Elliott Leah E.²,Derito Christopher M.³,Hay Anthony G.³^ORCID

Affiliation:

1. United States Department of Agriculture, Agricultural Research Service, Southern Regional Research Center , New Orleans, Louisiana, USA

2. Department of Biological and Chemical Sciences, Wells College , Aurora, New York, USA

3. Department of Microbiology, Cornell University , Ithaca, New York, USA

Abstract

ABSTRACT The genomes of 11 bacteria and 3 archaea were assembled from metagenomic DNA extracted from sugarcane mill mud. These metagenome-assembled genomes ranged from 1.79 to 6.45 Mb, with 2,263 to 5,551 predicted proteins, 80.65% to 100% genome completeness, and 43.19% to 68.02% G+C content.

Funder

U.S. Department of Agriculture

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00568-23

Reference27 articles.

1. Chemical and microbial characterization of sugarcane mill mud for soil applications

2. KBase: The United States Department of Energy Systems Biology Knowledgebase

3. Trimmomatic: a flexible trimmer for Illumina sequence data

4. Icarus: visualizer for de novo assembly evaluation

5. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

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