Genetic Diversity and Abundance of Flavobacterial Proteorhodopsin in China Seas-Reference-Cited by-同舟云学术

Genetic Diversity and Abundance of Flavobacterial Proteorhodopsin in China Seas

Published:2009-01-15 Issue:2 Volume:75 Page:529-533
ISSN:0099-2240
Container-title:Applied and Environmental Microbiology
language:en
Short-container-title:Appl Environ Microbiol

Author:

Zhao Meiru¹,Chen Feng²,Jiao Nianzhi¹

Affiliation:

1. State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, China

2. Center of Marine Biotechnology, University of Maryland Biotechnology Institute, Baltimore, Maryland 21202

Abstract

ABSTRACT Proteorhodopsin (PR) genes related to Flavobacteria were found to be highly diverse in the East and South China seas and displayed a distinct geographic pattern, which appeared to reflect cold versus warm adaptation when Global Oceanic Sampling database metagenomic data were included. Flavobacterial PR genes were more abundant offshore than nearshore, implying that inheritance of the PR gene could be important for Flavobacteria living in the oligotrophic environment.

Publisher

American Society for Microbiology

Subject

Ecology,Applied Microbiology and Biotechnology,Food Science,Biotechnology

Link

https://journals.asm.org/doi/pdf/10.1128/AEM.01114-08

Reference32 articles.

1. Abell, G. C. J., and J. P. Bowman. 2005. Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol. Ecol.51:265-277.

2. Alonso, C., F. Warnecke, R. Amann, and J. Pernthaler. 2007. High local and global diversity of Flavobacteria in marine plankton. Environ. Microbiol.9:1253-1266.

3. Atamna-Ismaeel, N., G. Sabehi, I. Sharon, K.-P. Witzel, M. Labrenz, K. Jurgens, T. Barkay, M. Stomp, J. Huisman, and O. Béjà. 2008. Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems. ISME J.2:656-662.

4. Béjà, O., E. N. Spudich, J. L. Spudich, M. Leclerc, and E. F. DeLong. 2001. Proteorhodopsin phototrophy in the ocean. Nature411:786-789.

5. Béjà, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. B. Jovanovich, C. M. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich, and E. F. DeLong. 2000. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science289:1902-1906.

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