Genome Sequences of Anelloviruses, a Genomovirus, Microviruses, Polyomaviruses, and an Unclassified Caudovirus Identified in Vaginal Secretions from South African Adolescents

Author:

Jimoh Adijat O.123,Balle Christina12ORCID,Brown Bryan45,Feng Colin4,Havyarimana Enock126,Konstantinus Iyaloo N.278,Gill Katherine7,Bekker Linda-Gail9,Passmore Jo-Ann S.1291011,Jaspan Heather B.124512ORCID,Varsani Arvind1314ORCID,Happel Anna-Ursula12ORCID

Affiliation:

1. Department of Pathology, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa

2. Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa

3. Genetics, Genomics, and Bioinformatics Department, National Biotechnology Development Agency, Abuja, Nigeria

4. Seattle Children’s Research Institute, Seattle, Washington, USA

5. Department of Pediatrics, University of Washington School of Medicine, Seattle, Washington, USA

6. School of Infection and Immunity, University of Glasgow, Glasgow, United Kingdom

7. Namibia Institute of Pathology, Windhoek, Namibia

8. NRF-DST Centre of Excellence in HIV Prevention, Centre for the AIDS Programme of Research in South Africa, Durban, South Africa

9. Desmond Tutu HIV Centre, University of Cape Town, Cape Town, South Africa

10. National Health Laboratory Service, Cape Town, South Africa

11. Division of Medical Virology, Department of Pathology, University of Cape Town, Cape Town, South Africa

12. Department of Global Health, University of Washington, Seattle, Washington, USA

13. The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, Arizona, USA

14. Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa

Abstract

Other than for papillomaviruses, there is a paucity of whole-genome sequences for bacteriophages and eukaryote-infecting viruses isolated from the female genital tract. Here, we report the genome sequences of 16 microviruses, 3 anelloviruses, 2 polyomaviruses, 1 genomovirus, and 1 caudovirus that were identified in vaginal secretion samples from adolescents in South Africa.

Funder

Bill and Melinda Gates Foundation

EC | H2020 | ERA-LEARN | European and Developing Countries Clinical Trials Partnership

HHS | National Institutes of Health

Poliomyelitis Research Foundation

South African Medical Research Council

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

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