Broad and Dynamic Diversification of Infectious Hepatitis C Virus in a Cell Culture Environment

Author:

Gallego Isabel12,Soria María Eugenia1,García-Crespo Carlos1,Chen Qian13,Martínez-Barragán Patricia1,Khalfaoui Soumaya1,Martínez-González Brenda1,Sanchez-Martin Irene1,Palacios-Blanco Inés1,de Ávila Ana Isabel1,García-Cehic Damir23,Esteban Juan Ignacio234,Gómez Jordi25,Briones Carlos26,Gregori Josep237,Quer Josep234,Perales Celia128,Domingo Esteban12

Affiliation:

1. Centro de Biología Molecular “Severo Ochoa” (CBMSO, CSIC-UAM), Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain

2. Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, Madrid, Spain

3. Liver Unit, Internal Medicine Hospital Universitari Vall d’Hebron, Vall d’Hebron Institut de Recerca (VHIR), Barcelona, Spain

4. Universitat Autónoma de Barcelona, Barcelona, Spain

5. Instituto de Parasitología y Biomedicina “López-Neyra” (IPBLN, CSIC), Parque Tecnológico Ciencias de la Salud, Armilla, Granada, Spain

6. Centro de Astrobiología (CAB, CSIC-INTA), Madrid, Spain

7. Roche Diagnostics, S.L., Sant Cugat del Vallés, Barcelona, Spain

8. Department of Clinical Microbiology, IIS-Fundación Jiménez Díaz, Madrid, Spain

Abstract

The study shows that extensive replication of an RNA virus in a constant biological environment does not limit exploration of sequence space and adaptive options. There was no convergence toward a restricted set of adapted genomes. Mutational waves and mutant spectrum broadening affected infectious genomes. Therefore, profound modifications of mutant spectrum composition and consensus sequence diversification are not exclusively dependent on environmental alterations or the intervention of population bottlenecks.

Funder

CIBER Hepatic and Digestive Diseases

Centre for Industrial Technological Development

MEC | Instituto de Salud Carlos III

MEC | Agencia Estatal de Investigación

Comunidad de Madrid

Ministerio de Economía, Industria y Competitividad, Gobierno de España

Ministerio de Ciencia, Innovación y Universidades

Publisher

American Society for Microbiology

Subject

Virology,Insect Science,Immunology,Microbiology

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1. Fitness-Dependent, Mild Mutagenic Activity of Sofosbuvir for Hepatitis C Virus;Antimicrobial Agents and Chemotherapy;2023-07-18

2. Hepatitis C virus fitness can influence the extent of infection-mediated epigenetic modifications in the host cells;Frontiers in Cellular and Infection Microbiology;2023-03-13

3. Viral Fitness Landscapes Based on Self-organizing Maps;Current Topics in Microbiology and Immunology;2023

4. Viral Fitness, Population Complexity, Host Interactions, and Resistance to Antiviral Agents;Current Topics in Microbiology and Immunology;2023

5. Viruses in astrobiology;Frontiers in Microbiology;2022-10-26

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