Interoperable workflows by exchanging grid-based data between quantum-chemical program packages

Author:

Focke Kevin1ORCID,De Santis Matteo2ORCID,Wolter Mario1ORCID,Martinez B Jessica A.23ORCID,Vallet Valérie2ORCID,Pereira Gomes André Severo2ORCID,Olejniczak Małgorzata4ORCID,Jacob Christoph R.1ORCID

Affiliation:

1. Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig 1 , Gaußstraße 17, 38106 Braunschweig, Germany

2. CNRS, UMR 8523–PhLAM–Physique des Lasers Atomes et Molécules, Univ. Lille 2 , F-59000 Lille, France

3. Department of Chemistry, Rutgers University 3 , Newark, New Jersey 07102, USA

4. Centre of New Technologies, University of Warsaw 4 , S. Banacha 2c, 02-097 Warsaw, Poland

Abstract

Quantum-chemical subsystem and embedding methods require complex workflows that may involve multiple quantum-chemical program packages. Moreover, such workflows require the exchange of voluminous data that go beyond simple quantities, such as molecular structures and energies. Here, we describe our approach for addressing this interoperability challenge by exchanging electron densities and embedding potentials as grid-based data. We describe the approach that we have implemented to this end in a dedicated code, PyEmbed, currently part of a Python scripting framework. We discuss how it has facilitated the development of quantum-chemical subsystem and embedding methods and highlight several applications that have been enabled by PyEmbed, including wave-function theory (WFT) in density-functional theory (DFT) embedding schemes mixing non-relativistic and relativistic electronic structure methods, real-time time-dependent DFT-in-DFT approaches, the density-based many-body expansion, and workflows including real-space data analysis and visualization. Our approach demonstrates, in particular, the merits of exchanging (complex) grid-based data and, in general, the potential of modular software development in quantum chemistry, which hinges upon libraries that facilitate interoperability.

Funder

Agence Nationale de la Recherche

Deutsche Forschungsgemeinschaft

French National Supercomputing Facilities

Office for Science and Technology of the Embassy of France in the United States

National Science Foundation

Polish National Science Centre

Publisher

AIP Publishing

Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3