Repairing Boolean logical models from time-series data using Answer Set Programming-Reference-Cited by-同舟云学术

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Repairing Boolean logical models from time-series data using Answer Set Programming

Published:2019-03-25 Issue:1 Volume:14 Page:
ISSN:1748-7188
Container-title:Algorithms for Molecular Biology
language:en
Short-container-title:Algorithms Mol Biol

Author:

Lemos Alexandre^ORCID,Lynce Inês,Monteiro Pedro T.

Funder

Fundação para a Ciência e a Tecnologia

Universidade de Lisboa

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s13015-019-0145-8.pdf

Reference41 articles.

1. Markowetz F. All biology is computational biology. PLoS Biol. 2017;15(3):2002050. https://doi.org/10.1371/journal.pbio.2002050 .

2. Chaouiya C. Petri net modelling of biological networks. Brief Bioinform. 2007;8(4):210–9. https://doi.org/10.1093/bib/bbm029 .

3. Glass L, Kauffman S. The logical analysis of continuous, non-linear biochemical control networks. J Theor Biol. 1973;39(1):103–29. https://doi.org/10.1016/0022-5193(73)90208-7 .

4. Thomas R, Thieffry D, Kaufman M. Dynamical behaviour of biological regulatory networks: I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull Math Biol. 1995;57(2):247–76. https://doi.org/10.1007/BF02460618 .

5. Abou-Jaoude W, Traynard P, Monteiro PT, Saez-Rodriguez J, Helikar T, Thieffry D, Chaouiya C. Logical modeling and dynamical analysis of cellular networks. Front Genet. 2016;7:94. https://doi.org/10.3389/fgene.2016.00094 .

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1. Logical Modelling, Some Recent Methodological Advances Illustrated;Lecture Notes in Computer Science;2024

2. Semi-automatic model revision of Boolean regulatory networks: confronting time-series observations with (a)synchronous dynamics;2020-05-12

3. Revision of Boolean Models of Regulatory Networks Using Stable State Observations;Journal of Computational Biology;2020-02-01

4. ModRev - Model Revision Tool for Boolean Logical Models of Biological Regulatory Networks;Computational Methods in Systems Biology;2020

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