An efficient algorithm for protein structure comparison using elastic shape analysis-Reference-Cited by-同舟云学术

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An efficient algorithm for protein structure comparison using elastic shape analysis

Published:2016-09-29 Issue:1 Volume:11 Page:
ISSN:1748-7188
Container-title:Algorithms for Molecular Biology
language:en
Short-container-title:Algorithms Mol Biol

Author:

Srivastava S.,Lal S. B.,Mishra D. C.,Angadi U. B.,Chaturvedi K. K.,Rai S. N.,Rai A.

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s13015-016-0089-1.pdf

Reference44 articles.

1. Kolodny R, Koehl P, Levitt M. Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J Mol Biol. 2005;346(4):1173–88.

2. Thompson JD, Plewniak F, Poch O. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics. 1999;15:87–8.

3. Sauder JM, Arthur JW, Dunbrack RL. Large scale comparison of protein sequence alignment algorithms with structure alignments. Proteins Struct Func Genet. 2000;40:6–22.

4. Novotny M, Madsen D, Kleywegt GJ. Evaluation of protein-fold-comparison servers. Proteins Struct Funct Genet. 2004;54:260–70.

5. Holm L, Ouzounis C, Sander C, Tuparev G, Vriend G. A database of protein structure families with common folding motifs. Protein Sci. 1992;1(12):1691–8.

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