Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences
Author:
Funder
ANR
Publisher
Springer Science and Business Media LLC
Subject
Ecology, Evolution, Behavior and Systematics
Link
http://link.springer.com/content/pdf/10.1186/s12862-019-1350-2.pdf
Reference41 articles.
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3. Philippe H, Brinkmann H, Lavrov DV, Littlewood DTJ, Manuel M, Wörheide G, et al. Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 2011;9.
4. Schneider A, Souvorov A, Sabath N, Landan G, Gonnet GH, Graur D. Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment. Genome Biol Evol. 2009;1:114–8.
5. Markova-Raina P, Petrov D. High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Res. 2011;21:863–74.
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