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Genome-wide protein phylogenies for four African cichlid species

  • Published:2018-01-08 Issue:1 Volume:18 Page:
  • ISSN:1471-2148
  • Container-title:BMC Evolutionary Biology
  • language:en
  • Short-container-title:BMC Evol Biol

Author:

Ramakrishnan Varadarajan Ajay,Mopuri Rohini,Streelman J. Todd,McGrath Patrick T.

Funder

National Institute on Aging

National Institute of General Medical Sciences

Ellison Medical Foundation

Publisher

Springer Science and Business Media LLC

Subject

Ecology, Evolution, Behavior and Systematics

Reference49 articles.

1. Aken BL, Ayling S, Barrell D, Clarke L, Curwen V, Fairley S, Fernandez Banet J, Billis K, Garcia Giron C, Hourlier T, Howe K, Kahari A, Kokocinski F, Martin FJ, Murphy DN, Nag R, Ruffier M, Schuster M, Tang YA, Vogel JH, White S, Zadissa A, Flicek P, Searle SM. The Ensembl gene annotation system. Database (Oxford). 2016;2016

2. Altenhoff AM, Studer RA, Robinson-Rechavi M, Dessimoz C. Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs. PLoS Comput Biol. 2012;8(5):e1002514.

3. Bell MA, Foster SA. The evolutionary biology of the threespine stickleback. In: Oxford. New York: Oxford University Press; 1994.

4. Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleton KL, Conte MA, D'Cotta H, Eshel O, Gaffney L, Galibert F, Gante HF, Gnerre S, Greuter L, Guyon R, Haddad NS, Haerty W, Harris RM, Hofmann HA, Hourlier T, Hulata G, Jaffe DB, Lara M, Lee AP, MacCallum I, Mwaiko S, Nikaido M, Nishihara H, Ozouf-Costaz C, Penman DJ, Przybylski D, Rakotomanga M, Renn SC, Ribeiro FJ, Ron M, Salzburger W, Sanchez-Pulido L, Santos ME, Searle S, Sharpe T, Swofford R, Tan FJ, Williams L, Young S, Yin S, Okada N, Kocher TD, Miska EA, Lander ES, Venkatesh B, Fernald RD, Meyer A, Ponting CP, Streelman JT, Lindblad-Toh K, Seehausen O, Di Palma F. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 2014;513(7518):375–81.

5. Chan, Y. F., M. E. Marks, F. C. Jones, G. Villarreal, Jr., M. D. Shapiro, S. D. Brady, A. M. Southwick, D. M. Absher, J. Grimwood, J. Schmutz, R. M. Myers, D. Petrov, B. Jonsson, D. Schluter, M. A. Bell and D. M. Kingsley (2010). "Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer." Science 327(5963): 302–305.

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