Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data-Reference-Cited by-同舟云学术

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Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data

Published:2014 Issue:1 Volume:15 Page:80
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Levitsky Victor G,Kulakovskiy Ivan V,Ershov Nikita I,Oshchepkov Dmitry,Makeev Vsevolod J,Hodgman T C,Merkulova Tatyana I

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Reference50 articles.

1. Insights from genomic profiling of transcription factors

2. A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

3. Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes

4. Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

5. DNA binding sites: representation and discovery

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1. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis;Frontiers in Plant Science;2022-07-28

2. Regulatory SNPs: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases;International Journal of Molecular Sciences;2021-06-16

3. Disease-associated genetic variants in the regulatory regions of human genes: mechanisms of action on transcription and genomic resources for dissecting these mechanisms;Vavilov Journal of Genetics and Breeding;2021-03-16

4. Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites;Vavilov Journal of Genetics and Breeding;2021-03-16

5. NoPeak: k-mer-based motif discovery in ChIP-Seq data without peak calling;Bioinformatics;2020-09-29

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