Analysis and prediction of single-stranded and double-stranded DNA binding proteins based on protein sequences-Reference-Cited by-同舟云学术

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Analysis and prediction of single-stranded and double-stranded DNA binding proteins based on protein sequences

Published:2017-06-12 Issue:1 Volume:18 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Wang Wei,Sun Lin,Zhang Shiguang,Zhang Hongjun,Shi Jinling,Xu Tianhe,Li Keliang

Funder

the Science and Technology Research Key Project of Educational Department of Henan Province

Ph.D. Research Startup Foundation of Henan Normal University

National Natural Science Foundation of China

Key Project of Science and Technology Department of Henan Province

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-017-1715-8.pdf

Reference56 articles.

1. Edsö JR, Gustafsson C, Cohn M. Single- and double-stranded DNA binding proteins act in concert to conserve a telomeric DNA core sequence. Genome Integrity. 2011;2(1):1–9.

2. Attaiech L, Olivier A, Mortier-Barrière I, Soulet AL, Granadel C, Martin B, et al. Role of the single-stranded DNA-binding protein SsbB in pneumococcal transformation: maintenance of a reservoir for genetic plasticity. PLoS Genet. 2011;7(6):1–12.

3. Shlyakhtenko LS, Lushnikov AY, Miyagi A, Lyubchenko YL. Specificity of binding of single-stranded DNA-binding protein to its target. Biochemistry-US. 2012;51(7):1500–9.

4. Richard DJ, Bolderson E, Cubeddu L, Richard DJ, Bolderson E, Cubeddu L, et al. Single-stranded DNA-binding protein hssb1 is critical for genomic stability. Nature. 2008;453(5):677–81.

5. Delagoutte E, Heneman-Masurel A, Baldacci G. Single-stranded DNA binding proteins unwind the newly synthesized double-stranded DNA of model miniforks. Biochemistry. 2011;50(6):932–44.

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1. Improved prediction of DNA and RNA binding proteins with deep learning models;Briefings in Bioinformatics;2024-05-23

2. CNN-Pred: Prediction of single-stranded and double-stranded DNA-binding protein using convolutional neural networks;Gene;2023-02

3. Single-Stranded DNA Binding Proteins and Their Identification Using Machine Learning-Based Approaches;Biomolecules;2022-08-26

4. Prediction of DNA-Binding Protein–Drug-Binding Sites Using Residue Interaction Networks and Sequence Feature;Frontiers in Bioengineering and Biotechnology;2022-04-20

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