muBLASTP: database-indexed protein sequence search on multicore CPUs-Reference-Cited by-同舟云学术

muBLASTP: database-indexed protein sequence search on multicore CPUs

Published:2016-11-04 Issue:1 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Zhang Jing,Misra Sanchit,Wang Hao,Feng Wu-chun

Funder

National Science Foundation

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-1302-4.pdf

Reference31 articles.

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2. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+ Architecture and Applications. BMC Bioinforma. 2009; 10:421.

3. Bjornson RD, Sherman AH, Weston SB, Willard N, Wing J. TurboBLAST(r): A Parallel Implementation of BLAST Built on the TurboHub. In: 16th IEEE Int’l Parallel & Distrib. Processing Symp. Washington: IEEE Computer Society: 2002. p. 8.

4. Oehmen CS, Baxter DJ. ScalaBLAST 2.0: Rapid and Robust BLAST Calculations on Multiprocessor Systems. Bioinformatics. 2013; 29(6):797–8.

5. Darling AE, Carey L, Feng W. The Design, Implementation, and Evaluation of mpiBLAST; 2003.

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