CLAST: CUDA implemented large-scale alignment search tool-Reference-Cited by-同舟云学术

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CLAST: CUDA implemented large-scale alignment search tool

Published:2014-12 Issue:1 Volume:15 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Yano Masahiro,Mori Hiroshi,Akiyama Yutaka,Yamada Takuji,Kurokawa Ken

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/article/10.1186/s12859-014-0406-y/fulltext.html

Reference26 articles.

1. Performance and Specifications for HiSeq 2500/1500 [http://www.illumina.com/systems/hiseq_2500_1500/performance_specifications.ilmn]

2. Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto J-M, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, et al: A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010, 464: 59-65. 10.1038/nature08821.

3. The Human Microbiome Project Consortium: A framework for human microbiome research. Nature. 2012, 486: 215-221. 10.1038/nature11209.

4. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410. 10.1016/S0022-2836(05)80360-2.

5. Kent WJ: BLAT–the BLAST-like alignment tool. Genome Res. 2002, 12: 656-664. 10.1101/gr.229202. Article published online before March 2002.

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