Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing-Reference-Cited by-同舟云学术

Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing

Published:2015-07-28 Issue:1 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Samaniego Castruita Jose Alfredo,Zepeda Mendoza Marie Lisandra,Barnett Ross,Wales Nathan,Gilbert M Thomas P.

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/article/10.1186/s12859-015-0682-1/fulltext.html

Reference85 articles.

1. Du Buy HG, Riley FL. Hybridization between the nuclear and kinetoplast DNA’s of Leishmania enriettii and between nuclear and mitochondrial DNA's of mouse liver. Proc Natl Acad Sci U S A. 1967;57:790–7.

2. Wang D, Wu YW, Shih ACC, Wu CS, Wang YN, Chaw SM. Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA. Mol Biol Evol. 2007;24:2040–8.

3. Smith DR. Extending the limited transfer window hypothesis to inter-organelle DNA migration. Genome Biol Evol. 2011;3:743–8.

4. Roark LM, Hui AY, Donnelly L, Birchler JA, Newton KJ. Recent and frequent insertions of chloroplast DNA into maize nuclear chromosomes. Cytogenet Genome Res. 2010;129:17–23.

5. Michalovova M, Vyskot B, Kejnovsky E. Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization. Heredity (Edinb). 2013;111:314–20.

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