Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems
Author:
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology
Link
http://link.springer.com/article/10.1186/s12859-014-0364-4/fulltext.html
Reference47 articles.
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2. Lareau LF, Green RE, Bhatnagar RS, Brenner SE: The evolving roles of alternative splicing . Curr Opin Struct Biol. 2004, 14 (3): 273-282. 10.1016/j.sbi.2004.05.002.
3. Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW: Alternative splicing in plants°Coming of age . Trends Plant Sci. 2012, 17 (10): 616-623. 10.1016/j.tplants.2012.06.001.
4. Keren H, Lev-Maor G, Ast G: Alternative splicing and evolution: diversification, exon definition and function . Nat Rev Genet. 2010, 11 (5): 345-355. 10.1038/nrg2776.
5. Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, et al: The developmental transcriptome of Drosophila melanogaster . Nature. 2011, 471 (7339): 473-479. 10.1038/nature09715.
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