T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes-Reference-Cited by-同舟云学术

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T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes

Published:2017-01-05 Issue:1 Volume:18 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Tsimpidis Michail,Bachoumis Georgios,Mimouli Kalliopi,Kyriakopoulou Zaharoula,Robertson David L.,Markoulatos Panayotis,Amoutzias Grigoris D.^ORCID

Funder

Aristeia II action

research grants from the Postgraduate Programme ‘Applications of Molecular Biology-Genetics, Diagnostic Biomarkers’

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-1420-z.pdf

Reference46 articles.

1. Simon-Loriere E, Holmes EC. Why do RNA viruses recombine? Nat Rev Microbiol. 2011;9:617–26.

2. Kyriakopoulou Z, Pliaka V, Amoutzias GD, Markoulatos P. Recombination among human non-polio enteroviruses: implications for epidemiology and evolution. Virus Genes. 2015;50(2):177-88.

3. Mitchell M. An introduction to genetic algorithms. 7. print. Cambridge, MIT Press; 2001.

4. Malim MH, Emerman M. HIV-1 sequence variation: drift, shift, and attenuation. Cell. 2001;104:469–72.

5. Nora T, Charpentier C, Tenaillon O, Hoede C, Clavel F, Hance AJ. Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment. J Virol. 2007;81:7620–8.

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