Estimating the optimal linear combination of predictors using spherically constrained optimization

Author:

Das PriyamORCID,De Debsurya,Maiti Raju,Kamal Mona,Hutcheson Katherine A.,Fuller Clifton D.,Chakraborty Bibhas,Peterson Christine B.

Abstract

Abstract Background In the context of a binary classification problem, the optimal linear combination of continuous predictors can be estimated by maximizing the area under the receiver operating characteristic curve. For ordinal responses, the optimal predictor combination can similarly be obtained by maximization of the hypervolume under the manifold (HUM). Since the empirical HUM is discontinuous, non-differentiable, and possibly multi-modal, solving this maximization problem requires a global optimization technique. Estimation of the optimal coefficient vector using existing global optimization techniques is computationally expensive, becoming prohibitive as the number of predictors and the number of outcome categories increases. Results We propose an efficient derivative-free black-box optimization technique based on pattern search to solve this problem, which we refer to as Spherically Constrained Optimization Routine (SCOR). Through extensive simulation studies, we demonstrate that the proposed method achieves better performance than existing methods including the step-down algorithm. Finally, we illustrate the proposed method to predict the severity of swallowing difficulty after radiation therapy for oropharyngeal cancer based on radiation dose to various structures in the head and neck. Conclusions Our proposed method addresses an important challenge in combining multiple biomarkers to predict an ordinal outcome. This problem is particularly relevant to medical research, where it may be of interest to diagnose a disease with various stages of progression or a toxicity with multiple grades of severity. We provide the implementation of our proposed SCOR method as an R package, available online at https://CRAN.R-project.org/package=SCOR.

Funder

ministry of education, singapore

duke-nus medical school

national institutes of health/national cancer center

cancer prevention and research institute of texas

national institutes of health

charles and daneen stiefel md anderson oropharynx program

patient-centered outcomes research institute

national cancer institute

national institute of dental and craniofacial research

thrive/hesi

atos medical

the nci early phase clinical trials in imaging and image-guided interventions program

nsf/nih joint smart connected health program

nci parent rpg mechanism

nih nibib research education programs for residents and clinical fellows grant

nidcr academic industrial partnership grant

nci parent research project grant

nih/nci cancer center support grant

pilot research program award from the ut md anderson ccsg radiation oncology and cancer imaging program

nsf division of civil, mechanical, and manufacturing innovation (cmmi) grant

elekta ab

the multidisciplinary the radiation oncology/cancer imaging program

md anderson cancer center support grant

md anderson program in image-guided cancer therapy

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

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