Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces-Reference-Cited by-同舟云学术

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Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces

Published:2017-01-11 Issue:1 Volume:18 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Liu Zhi-Ping,Liu Shutang,Chen Ruitang,Huang Xiaopeng,Wu Ling-Yun^ORCID

Funder

Strategic Priority Research Program of the Chinese Academy of Sciences

National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences

National Natural Science Foundation of China

Natural Science Foundation of Shandong Province (CN)

Fundamental Research Funds of Shandong University

Scientific Research Foundation for the Returned Overseas Chinese Scholars, Ministry of Education of China

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-1410-1.pdf

Reference51 articles.

1. Lunde BM, Moore C, Varani G. RNA-binding proteins: modular design for efficient function. Nat Rev Mol Cell Biol. 2007;8(6):479–90.

2. Jones S, Daley DT, Luscombe NM, Berman HM, Thornton JM. Protein-RNA interactions: a structural analysis. Nucleic Acids Res. 2001;29(4):943–54.

3. Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008;6(10):e255.

4. Barik A, Bahadur RP. Hydration of protein-RNA recognition sites. Nucleic Acids Res. 2014;42(15):10148–60.

5. Jens M, Rajewsky N. Competition between target sites of regulators shapes post-transcriptional gene regulation. Nat Rev Genet. 2014;16(2):113–26.

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