The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

Author:

McDonald Daniel,Clemente Jose C,Kuczynski Justin,Rideout Jai Ram,Stombaugh Jesse,Wendel Doug,Wilke Andreas,Huse Susan,Hufnagle John,Meyer Folker,Knight Rob,Caporaso J Gregory

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Reference25 articles.

1. Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian M, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J, Weissenbach J, Bork P, Ehrlich SD, Wang J, MetaHIT Consortium: A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010, 464 (7285): 59-65. 10.1038/nature08821.

2. Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI: Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 2010, 466 (7304): 334-338. 10.1038/nature09199.

3. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC: IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res. 2012, 40: D115-122. 10.1093/nar/gkr1044.

4. Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A: Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. J Biotechnol. 2012, 158 (4): 248-258. 10.1016/j.jbiotec.2012.01.020.

5. Helbling DE, Ackermann M, Fenner K, Kohler HP, Johnson DR: The activity level of a microbial community function can be predicted from its metatranscriptome. ISME J. 2011, 6 (4): 902-904.

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