biobambam: tools for read pair collation based algorithms on BAM files-Reference-Cited by-同舟云学术

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biobambam: tools for read pair collation based algorithms on BAM files

Published:2014-06-20 Issue:1 Volume:9 Page:
ISSN:1751-0473
Container-title:Source Code for Biology and Medicine
language:en
Short-container-title:Source Code Biol Med

Author:

Tischler German,Leonard Steven

Publisher

Springer Science and Business Media LLC

Subject

Information Systems and Management,Health Informatics,Computer Science Applications,Information Systems

Link

http://link.springer.com/content/pdf/10.1186/1751-0473-9-13.pdf

Reference36 articles.

1. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Subgroup GPDP: The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009, 25 (16): 2078-2079. 10.1093/bioinformatics/btp352. [ http://bioinformatics.oxfordjournals.org/content/25/16/2078.abstract ].

2. The SAM file specification. [ http://samtools.sourceforge.net/SAM1.pdf ].

3. Ning Z, Cox AJ, Mullikin JC: SSAHA: a fast search method for large DNA databases. Genome Res. 2001, 11 (10): 1725-1729. 10.1101/gr.194201.

4. Li H, Durbin R: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009, 25 (14): 1754-1760. 10.1093/bioinformatics/btp324.

5. Li H, Durbin R: Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010, 26 (5): 589-595. 10.1093/bioinformatics/btp698.

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