The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)-Reference-Cited by-同舟云学术

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

Published:2015-10-26 Issue:1 Volume:10 Page:
ISSN:1944-3277
Container-title:Standards in Genomic Sciences
language:en
Short-container-title:Stand in Genomic Sci

Author:

Huntemann Marcel,Ivanova Natalia N.,Mavromatis Konstantinos,Tripp H. James,Paez-Espino David,Palaniappan Krishnaveni,Szeto Ernest,Pillay Manoj,Chen I-Min A.,Pati Amrita,Nielsen Torben,Markowitz Victor M.,Kyrpides Nikos C.

Funder

U.S. Department of Energy

Publisher

Springer Science and Business Media LLC

Subject

Genetics

Link

http://link.springer.com/content/pdf/10.1186/s40793-015-0077-y.pdf

Reference21 articles.

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3. Morgulis A, Gertz EM, Schäffer AA, Agarwala R. A fast and symmetric DUST implementation to mask low-complexity DNA sequences. J Comput Biol. 2006;5:1028–40.

4. Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, Kyrpides NC, et al. CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics. 2007;8:209.

5. Edgar RC. PILER-CR: fast and accurate identification of CRISPR repeats. BMC Bioinformatics. 2007;8:18.

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