DEApp: an interactive web interface for differential expression analysis of next generation sequence data

Author:

Li Yan,Andrade JorgeORCID

Publisher

Springer Science and Business Media LLC

Subject

Information Systems and Management,Health Informatics,Computer Science Applications,Information Systems

Reference12 articles.

1. Zhang W, Yu Y, Hertwig F, Thierry-Mieg J, Zhang W, Thierry-Mieg D, Wang J, Furlanello C, Devanarayan V, Cheng J, Deng Y, Hero B, Hong H, Jia M, Li L, Lin SM, Nikolsky Y, Oberthuer A, Qing T, Su Z, Volland R, Wang C, Wang MD, Ai J, Albanese D, Asgharzadeh S, Avigad S, Bao W, Bessarabova M, Brilliant MH, Brors B, Chierici M, Chu TM, Zhang J, Grundy RG, He MM, Hebbring S, Kaufman HL, Lababidi S, Lancashire LJ, Li Y, Lu XX, Luo H, Ma X, Ning B, Noguera R, Peifer M, Phan JH, Roels F, Rosswog C, Shao S, Shen J, Theissen J, Tonini GP, Vandesompele J, Wu PY, Xiao W, Xu J, Xu W, Xuan J, Yang Y, Ye Z, Dong Z, Zhang KK, Yin Y, Zhao C, Zheng Y, Wolfinger RD, Shi T, Malkas LH, Berthold F, Wang J, Tong W, Shi L, Peng Z, Fischer M. Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. Genome Biol. 2015; 16(1):1–12. doi: http://dx.doi.org/10.1186/s13059-015-0694-1 . Accessed 17 Dec 2015.

2. Zhang LQ, Cheranova D, Gibson M, Ding S, Heruth DP, Fang D, Ye SQ. RNA-seq Reveals Novel Transcriptome of Genes and Their Isoforms in Human Pulmonary Microvascular Endothelial Cells Treated with Thrombin. PLoS ONE. 2012; 7(2):31229. doi: http://dx.doi.org/10.1371/journal.pone.0031229 .

3. The Cancer Genome Atlas Research Network. Comprehensive molecular characterization of clear cell renal cell carcinoma. Nature. 2013; 499(7456):43–9. doi: http://dx.doi.org/10.1038/nature12222 . Accessed 17 Dec 2015.

4. Twine NA, Janitz K, Wilkins MR, Janitz M. Whole Transcriptome Sequencing Reveals Gene Expression and Splicing Differences in Brain Regions Affected by Alzheimer’s Disease. PLoS ONE. 2011; 6(1):16266. doi: http://dx.doi.org/10.1371/journal.pone.0016266 .

5. Kanematsu S, Tanimoto K, Suzuki Y, Sugano S. Screening for possible miRNA–mRNA associations in a colon cancer cell line. Gene. 2014; 533(2):520–31. doi: http://dx.doi.org/10.1016/j.gene.2013.08.005 .

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