DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems-Reference-Cited by-同舟云学术

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DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

Published:2018-06-19 Issue:1 Volume:12 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Smith Robert W.,van Rosmalen Rik P.,Martins dos Santos Vitor A. P.,Fleck Christian

Funder

FP7 Marie Curie Initial Training Network

Human Frontier Science Program (FR)

Horizon 2020

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modeling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12918-018-0584-8.pdf

Reference59 articles.

1. Costa RS, Hartmann A, Gaspar P, Neves AR, Vinga S. An extended dynamic model of lactococcus lactis metabolism for mannitol and 2,3-butanediol production. Mol Biosyst. 2014; 10:628–39.

2. Rienksma RA, Suarez-Diaz M, Spina L, Schaap PJ, dos Santos VAPM. Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets. Semin Immunol. 2014; 26:610–22.

3. Varma A, Palsson BØ. Metabolic capabilities of escherichia coli: Ii. optimal growth patterns. J Theor Biol. 1993; 165:503–22.

4. Kauffman KJ, Prakash P, Edwards JS. Advances in flux balance analysis. Curr Opin Biotechnol. 2003; 14:491–6.

5. Smallbone K, Mendes P. Large-scale metabolic models: from reconstruction to differential equations. Ind Biotechnol. 2013; 9:179–184.

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