Parameter inference for stochastic single-cell dynamics from lineage tree data-Reference-Cited by-同舟云学术

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Parameter inference for stochastic single-cell dynamics from lineage tree data

Published:2017-04-26 Issue:1 Volume:11 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Kuzmanovska Irena,Milias-Argeitis Andreas,Mikelson Jan,Zechner Christoph,Khammash Mustafa

Funder

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (CH)

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modeling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12918-017-0425-1.pdf

Reference25 articles.

1. McAdams HH, Arkin A. Stochastic mechanisms in gene expression. Proc Natl Acad Sci USA. 1997; 94(3):814–9.

2. Elowitz MB, Levine AJ, Siggia ED, Swain PS. Stochastic gene expression in a single cell. Science. 2002; 297(5584):1183–6.

3. Hansen AS, O’Shea EK. Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression. Mol Syst Biol. 2013; 9(1):704.

4. Young JW, Locke JC, Altinok A, Rosenfeld N, Bacarian T, Swain PS, Mjolsness E, Elowitz MB. Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy. Nat Protoc. 2012; 7(1):80–8.

5. Zechner C, Unger M, Pelet S, Peter M, Koeppl H. Scalable inference of heterogeneous reaction kinetics from pooled single-cell recordings. Nat Methods. 2014; 11(2):197–202.

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2. Single-cell Ca²⁺parameter inference reveals how transcriptional states inform dynamic cell responses;2022-05-20

3. Bioimaging approaches for quantification of individual cell behavior during cell fate decisions;Biochemical Society Transactions;2022-02-15

4. Promoters adopt distinct dynamic manifestations depending on transcription factor context;Molecular Systems Biology;2021-02

5. Identification of stochastic gene expression models over lineage trees;IFAC PAPERSONLINE;2021

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