How accurate is automated gap filling of metabolic models?-Reference-Cited by-同舟云学术

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How accurate is automated gap filling of metabolic models?

Published:2018-06-19 Issue:1 Volume:12 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Karp Peter D.^ORCID,Weaver Daniel,Latendresse Mario

Funder

National Institute of General Medical Sciences

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modelling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12918-018-0593-7.pdf

Reference25 articles.

1. Kumar VS, Dasika MS, Maranas CD. Optimization based automated curation of metabolic reconstructions. BMC Bioinformatics. 2007; 8:212.

2. Henry CS, DeJongh M, Best AA, Frybarger PM, Linsay B, Stevens RL. High-throughput generation, optimization and analysis of genome-scale metabolic models. Nat Biotechnol. 2010; 28(9):977–82.

3. Vitkin E, Shlomi T. MIRAGE: A functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks. Genome Biol. 2012; 13(11):111.

4. Benedict MN, Mundy MB, Henry CS, Chia N, Price ND. Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models. PLoS Comput Biol. 2014; 10(10):1003882.

5. Pan S, Reed JL. Advances in gap-filling genome-scale metabolic models and model-driven experiments lead to novel metabolic discoveries. Curr Opin Biotechnol. 2017; 51:103–8.

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