Fast randomized approximate string matching with succinct hash data structures-Reference-Cited by-同舟云学术

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Fast randomized approximate string matching with succinct hash data structures

Published:2015-06-01 Issue:S9 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Policriti Alberto,Prezza Nicola

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-16-S9-S4.pdf

Reference13 articles.

1. Ferragina P, Manzini G: Opportunistic data structures with applications. Foundations of Computer Science, 2000 Proceedings 41st Annual Symposium on. 2000, 390-398. IEEE

2. Langmead B, Trapnell C, Pop M, Salzberg SL, et al: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10 (3): R25-10.1186/gb-2009-10-3-r25.

3. Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J: SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics. 2009, 25 (15): 1966-1967. 10.1093/bioinformatics/btp336.

4. Li H, Durbin R: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009, 25 (14): 1754-1760. 10.1093/bioinformatics/btp324.

5. Vezzi F, Del Fabbro C, Tomescu AI, Policriti A: rNA: a fast and accurate short reads numerical aligner. Bioinformatics. 2012, 28: 123-124. 10.1093/bioinformatics/btr617.

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2. q ‐frame hash comparison based exact string matching algorithms for DNA sequences;Concurrency and Computation: Practice and Experience;2021-07-26

3. Simple and Efficient Pattern Matching Algorithms for Biological Sequences;IEEE Access;2020

4. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2;BMC Bioinformatics;2016-02

5. Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics;BMC Bioinformatics;2015-06-01

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