Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data

Author:

Meuleman Wouter,Engwegen Judith YMN,Gast Marie-Christine W,Beijnen Jos H,Reinders Marcel JT,Wessels Lodewyk FA

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference18 articles.

1. Wright GL Jr, Cazares LH, Leung SM, Nasim S, Adam BL, Yip TT, Schellhammer PF, Gong L, Vlahou A: Proteinchip(R) surface enhanced laser desorption/ionization (SELDI) mass spectrometry: a novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixtures. Prostate Cancer Prostatic Dis 1999, 2(5/6):264–276.

2. Semmes OJ, Feng Z, Adam BL, Banez LL, Bigbee WL, Campos D, Cazares LH, Chan DW, Grizzle WE, Izbicka E, Kagan J, Malik G, McLerran D, Moul JW, Partin A, Prasanna P, Rosenzweig J, Sokoll LJ, Srivastava S, Srivastava S, Thompson I, Welsh MJ, White N, Winget M, Yasui Y, Zhang Z, Zhu L: Evaluation of Serum Protein Profiling by Surface-Enhanced Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for the Detection of Prostate Cancer: I. Assessment of Platform Reproducibility. Clin Chem 2005, 51: 65–74. 10.1373/clinchem.2005.053405

3. Malyarenko DI, Cooke WE, Adam BL, Malik G, Chen H, Tracy ER, Trosset MW, Sasinowski M, Semmes OJ, Manos DM: Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-flight mass spectrometric records for serum peptides using time-series analysis techniques. Clin Chem 2005, 51: 65–74. 10.1373/clinchem.2004.037283

4. Morris JS, Coombes KR, Koomen J, Baggerly KA, Kobayashi R: Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. Bioinformatics 2005, 21(9):1764–1775. 10.1093/bioinformatics/bti254

5. Baggerly KA, Morris JS, Coombes KR: Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics 2004, 20(5):777–785. 10.1093/bioinformatics/btg484

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