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Statistical method on nonrandom clustering with application to somatic mutations in cancer

  • Published:2010-01-07 Issue:1 Volume:11 Page:
  • ISSN:1471-2105
  • Container-title:BMC Bioinformatics
  • language:en
  • Short-container-title:BMC Bioinformatics

Author:

Ye Jingjing,Pavlicek Adam,Lunney Elizabeth A,Rejto Paul A,Teng Chi-Hse

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference47 articles.

1. Vogelstein B, Kinzler KW: Cancer genes and the pathways they control. Nat Med 2004, 10: 789–799. 10.1038/nm1087

2. Weinstein IB, Joe AK: Mechanisms of disease: Oncogene addiction--a rationale for molecular targeting in cancer therapy. Nat Clin Pract Oncol 2006, 3: 448–457. 10.1038/ncponc0558

3. Cahill DP, Kinzler KW, Vogelstein B, Lengauer C: Genetic instability and darwinian selection in tumours. Trends Cell Biol 1999, 9: M57–60. 10.1016/S0962-8924(99)01661-X

4. Wang TL, Rago C, Silliman N, Ptak J, Markowitz S, Willson JKV, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE: Prevalence of somatic alterations in the colorectal cancer cell genome. PNAS 2002, 99: 3076–3080. 10.1073/pnas.261714699

5. Ding L, Getz G, Wheeler DA, Mardis ER, McLellan MD, Cibulskis K, Sougnez C, Greulich H, Muzny DM, Morgan MB, Fulton L, Fulton RS, Zhang Q, Wendl MC, Lawrence MS, Larson DE, Chen K, Dooling DJ, Sabo A, Hawes AC, Shen H, Jhangiani SN, Lewis LR, Hall O, Zhu Y, Mathew T, Ren Y, Yao J, Scherer SE, Clerc K, Metcalf GA, Ng B, Milosavljevic A, Gonzalez-Garay ML, Osborne JR, Meyer R, Shi X, Tang Y, Koboldt DC, Lin L, Abbott R, Miner TL, Pohl C, Fewell G, Haipek C, Schmidt H, Dunford-Shore BH, Kraja A, Crosby SD, Sawyer CS, Vickery T, Sander S, Robinson J, Winckler W, Baldwin J, Chirieac LR, Dutt A, Fennell T, Hanna M, Johnson BE, Onofrio RC, Thomas RK, Tonon G, Weir BA, Zhao X, Ziaugra L, Zody MC, Giordano T, Orringer MB, Roth JA, Spitz MR, Wistuba II, Ozenberger B, Good PJ, Chang AC, Beer DG, Watson MA, Ladanyi M, Broderick S, Yoshizawa A, Travis WD, Pao W, Province MA, Weinstock GM, Varmus HE, Gabriel SB, Lander ES, Gibbs RA, Meyerson M, Wilson RK: Somatic mutations affect key pathways in lung adenocarcinoma. Nature 2008, 455: 1069–1075. 10.1038/nature07423

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