Sorting genomes with rearrangements and segmental duplications through trajectory graphs

Author:

Shao Mingfu,Lin Yu,Moret Bernard

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference33 articles.

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2. Yancopoulos S, Attie O, Friedberg R: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics. 2005, 21 (16): 3340-3346. 10.1093/bioinformatics/bti535.

3. Bergeron A, Mixtacki J, Stoye J: A new linear-time algorithm to compute the genomic distance via the double cut and join distance. Theor Comput Sci. 2009, 410 (51): 5300-5316. 10.1016/j.tcs.2009.09.008.

4. Chen X: On sorting permutations by double-cut-and-joins. Proc 16th Conf Computing and Combinatorics (COCOON'10), Volume 6196 of Lecture Notes in Comp Sci. 2010, Springer Verlag, Berlin, 439-448.

5. Chen X, Sun R, Yu J: Approximating the double-cut-and-join distance between unsigned genomes. BMC Bioinformatics. 2011, 12 (Suppl 9): S17-10.1186/1471-2105-12-S9-S17.

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