Approximating the double-cut-and-join distance between unsigned genomes

Author:

Chen Xin,Sun Ruimin,Yu Jiadong

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference15 articles.

1. Bafna V, Pevzner PA: Genome rearrangements and sorting by reversals. SFCS '93: Proceedings of the 1993 IEEE 34th Annual Foundations of Computer Science 1993, 148–157.

2. Hannenhalli S, Pevzner P: To cut … or not to cut (applications of comparative physical maps in molecular evolution). SODA '96: Proceedings of the seventh annual ACM-SIAM symposium on Discrete algorithms 1996, 304–313.

3. Kececioglu JD, Sankoff D: Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement. Algorithmica 1995, 13(1/2):180–210.

4. Yancopoulos S, Attie O, Friedberg R: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 2005, 21(16):3340–3346. 10.1093/bioinformatics/bti535

5. Hannenhalli S, Pevzner PA: Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC 1995, 178–189.

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