Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications-Reference-Cited by-同舟云学术

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Published:2018-02-26 Issue:1 Volume:19 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Van den Berge Koen,Perraudeau Fanny,Soneson Charlotte,Love Michael I.,Risso Davide,Vert Jean-Philippe,Robinson Mark D.,Dudoit Sandrine,Clement Lieven^ORCID

Funder

IAP StUDyS grant

MRP N2N

Fonds Wetenschappelijk Onderzoek

Forschungskredit

National Institutes of Health

Agence Nationale de la Recherche

European Research Council

Adolph C. and Mary Sprague Miller Institute for Basic Research in Science, University of California Berkeley

Fulbright Foundation

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-018-1406-4.pdf

Reference67 articles.

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3. Law CW, Chen Y, Shi W, Smyth GK. voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 2014; 15(2):R29. http://www.pubmedcentral.nih.gov/articlerender.fcgi%3Fartid=4053721%26tool=pmcentrez%26rendertype=abstract .

4. Wang Z, Gerstein M, Snyder M. RNA-seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009; 10(1):57–63. http://www.nature.com/doifinder/10.1038/nrg2484 .

5. Goodwin S, McPherson JD, McCombie WR. Coming of age: ten years of next-generation sequencing technologies. Nat Rev Genet. 2016; 17(6):333–51. http://www.nature.com/doifinder/10.1038/nrg.2016.49 .

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