HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure-Reference-Cited by-同舟云学术

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HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Published:2016-03-02 Issue:1 Volume:17 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Zou Chenchen,Zhang Yuping,Ouyang Zhengqing

Funder

The Jackson Laboratory for Genomic Medicine

CHIP Faculty Affiliate Seed Grant, University of Connecticut

Pharmaceutical Research and Manufacturers of America Foundation

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-016-0896-1.pdf

Reference37 articles.

1. Miele A, Dekker J. Long-range chromosomal interactions and gene regulation. Mol Biosyst. 2008; 4:1046–57.

2. Dekker J. Gene regulation in the third dimension. Science. 2008; 319:1793–4.

3. De S, Michor F. DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes. Nat Biotechnol. 2011; 29:1103–8.

4. Ong CT, Corces VG. Ctcf: an architectural protein bridging genome topology and function. Nat Rev Genet. 2014; 15(4):234–46.

5. Van Steensel B, Dekker J. Genomics tools for unraveling chromosome architecture. Nat Biotechnol. 2010; 28(10):1089–95.

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4. A 3-D Chromosome Structure Reconstruction Method With High Resolution Hi-C Data Using Nonlinear Dimensionality Reduction and Divide-and-Conquer Strategy;IEEE Transactions on NanoBioscience;2023-10

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