HiC-Pro: an optimized and flexible pipeline for Hi-C data processing-Reference-Cited by-同舟云学术

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

Published:2015-12 Issue:1 Volume:16 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Servant Nicolas,Varoquaux Nelle,Lajoie Bryan R.,Viara Eric,Chen Chong-Jian,Vert Jean-Philippe,Heard Edith,Dekker Job,Barillot Emmanuel

Funder

Agence Nationale de la Recherche

European Research Coucil

ERC Advanced Investigator award

European Commission

National Human Genome Research Institute

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-015-0831-x.pdf

Reference28 articles.

1. de Wit E, de Laat W. A decade of 3C technologies: insights into nuclear organization. Genes Dev. 2012;26:11–24.

2. Barutcu AR, Fritz AJ, Sayyed KZ, van Wijnen AJ, Lian JB, Stein JL, et al. C-ing the genome: A compendium of chromosome conformation capture methods to study higher-order chromatin organization. J Cell Physiol. 2015;1097–4652. doi:10.1002/jcp.25062.

3. Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009;326(5950):289–93. doi: 10.1038/ng.947 .

4. Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, et al. Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of lincRNA genes in human cells. Nat Methods. 2015;12:71–8. doi: 10.1038/nmeth.3205 .

5. Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, et al. Spatial partitioning of the regulatory landscape of the x-inactivation centre. Nature. 2012;485(7398):381–5. doi: 10.1038/nature11049 .

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