IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses-Reference-Cited by-同舟云学术

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Published:2016-12 Issue:1 Volume:17 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Narayanasamy Shaman,Jarosz Yohan,Muller Emilie E. L.,Heintz-Buschart Anna,Herold Malte,Kaysen Anne,Laczny Cédric C.,Pinel Nicolás,May Patrick,Wilmes Paul

Funder

Fonds National de la Recherche Luxembourg (LU)

Fonds National de la Recherche Luxembourg

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-016-1116-8.pdf

Reference83 articles.

1. Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett C, Knight R, Gordon JI. The human microbiome project: exploring the microbial part of ourselves in a changing world. Nature. 2007;449:804–10.

2. Rittmann BE. Microbial ecology to manage processes in environmental biotechnology. Trends Biotechnol. 2006;24:261–6.

3. Stewart EJ. Growing unculturable bacteria. J Bacteriol. 2012;194:4151–60.

4. Narayanasamy S, Muller EEL, Sheik AR, Wilmes P. Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities. Microb Biotechnol. 2015;8:363–8.

5. Segata N, Waldron L, Ballarini A, Narasimhan V, Jousson O, Huttenhower C, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C. Computational meta’omics for microbial community studies. Mol Syst Biol. 2013;9:666.

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