A comparative evaluation of hybrid error correction methods for error-prone long reads-Reference-Cited by-同舟云学术

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A comparative evaluation of hybrid error correction methods for error-prone long reads

Published:2019-02-04 Issue:1 Volume:20 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Fu Shuhua,Wang Anqi,Au Kin Fai^ORCID

Funder

University of Iowa

National Human Genome Research Institute

Pharmaceutical Research and Manufacturers of America Foundation

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-018-1605-z.pdf

Reference60 articles.

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2. Hoang NV, Furtado A, Mason PJ, Marquardt A, Kasirajan L, Thirugnanasambandam PP, Botha FC, Henry RJ. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing. BMC Genomics. 2017;18(1):395.

3. Vembar SS, Seetin M, Lambert C, Nattestad M, Schatz MC, Baybayan P, Scherf A, Smith ML. Complete telomere-to-telomere de novo assembly of the plasmodium falciparum genome through long-read (> 11 kb), single molecule, real-time sequencing. DNA Res. 2016;23:339–51.

4. Magi A, Giusti B, Tattini L. Characterization of MinION nanopore data for resequencing analyses. Brief Bioinform. 2017;18:940–53.

5. Jain M, Olsen HE, Paten B, Akeson M. The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community. Genome Biol. 2016;17:239.

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