Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models-Reference-Cited by-同舟云学术

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Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models

Published:2016-03-31 Issue:1 Volume:17 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Brackley Chris A.,Brown Jill M.,Waithe Dominic,Babbs Christian,Davies James,Hughes Jim R.,Buckle Veronica J.,Marenduzzo Davide

Funder

European Research Council

Engineering and Physical Sciences Research Council

Medical Research Council

Joint Research Councils

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-016-0909-0

Reference64 articles.

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2. Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009; 326:289–93.

3. Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 2012; 485:376–80.

4. Rao SSP, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Lieberman-Aiden E. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014; 159:1665–80.

5. Bickmore WA, van Steensel B. Genome architecture: domain organization of interphase chromosomes. Cell. 2013; 152:1270–84.

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