SynGAP: a synteny-based toolkit for gene structure annotation polishing-Reference-Cited by-同舟云学术

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SynGAP: a synteny-based toolkit for gene structure annotation polishing

Published:2024-08-13 Issue:1 Volume:25 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Wu Fengqi,Mai Yingxiao,Chen Chengjie,Xia Rui^ORCID

Funder

Key Area Research and Development Program of Guangdong Province

National Natural Science Foundation of China

Open competition program of top ten critical priorities of Agricultural Science and Technology Innovation for the 14th Five-Year Plan of Guangdong Province

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1186/s13059-024-03359-8.pdf

Reference52 articles.

1. Zhu Z, Sun B, Cai W, Zhou X, Mao Y, Chen C, et al. Natural variations in the MYB transcription factor MYB31 determine the evolution of extremely pungent peppers. New Phytol. 2019;223(2):922–38.

2. Jiang S, Lv F, Gao L, Gu J, Yang R, Li S, et al. Novel R2R3-MYB transcription factor LiMYB75 enhances leaf callus regeneration efficiency in Lagerstroemia indica. Forests. 2023;14(3):517.

3. Nie B, Chen X, Hou Z, Li C, Sun W, Ji J, et al. Haplotype-phased genome revealed the butylphthalide biosynthesis and hybrid origin of Ligusticum chuanxiong. bioRxiv. 2023:2023.06. 13.544868.

4. Stanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B. AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Res. 2006;34(suppl_2):W435–9.

5. Li H. Protein-to-genome alignment with miniprot. Bioinformatics. 2023;39(1):btad014.

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