Computer analysis of colocalization of the TFs’ binding sites in the genome according to the ChIP-seq data-Reference-Cited by-同舟云学术

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Computer analysis of colocalization of the TFs’ binding sites in the genome according to the ChIP-seq data

Published:2017-07 Issue:5 Volume:7 Page:513-522
ISSN:2079-0597
Container-title:Russian Journal of Genetics: Applied Research
language:en
Short-container-title:Russ J Genet Appl Res

Author:

Dergilev A. I.,Spitsina A. M.,Chadaeva I. V.,Svichkarev A. V.,Naumenko F. M.,Kulakova E. V.,Galieva E. R.,Vityaev E. E.,Chen M.,Orlov Yu. L.

Publisher

Pleiades Publishing Ltd

Subject

Agronomy and Crop Science,Genetics,Animal Science and Zoology

Link

http://link.springer.com/content/pdf/10.1134/S2079059717050057.pdf

Reference44 articles.

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2. Babenko, V.N., Matvienko, V.F., and Safronova, N.S., Implication of transposons distribution on chromatin state and genome architecture in human, J. Biomol. Struct. Dyn., 2015, vol. 33, no. 1, pp. 10–11. doi 10.1080/07391102.2015.1032559

3. Bieda, M., Xu, X., Singer, M.A., Green, R., and Farnham, P., Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome, Genome Res., 2006, vol. 16, no. 5, pp. 595–605. doi 10.1101/gr.4887606

4. Boeva, V., Analysis of genomic sequence motifs for deciphering transcription factor binding and transcriptional regulation in eukaryotic cells, Front. Genet., 2016, vol. 7, p. 24. doi 10.3389/fgene.2016.00024

5. Boyer, L.A., Lee, T.I., Cole, M.F., Johnstone, S.E., Levine, S.S., Zucker, J.P., Guenther, M.G., Kumar, R.M., Murray, H.L., Jenner, R.G., Gifford, D.K., Melton, D.A., Jaenisch, R., and Young, R.A., Core transcriptional regulatory circuitry in human embryonic stem cells, Cell, 2005, vol. 122, no. 6, pp. 947–956. doi 10.1016/j.cell.2005.08.020

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