An international challenge to use artificial intelligence to define the state-of-the-art in kidney and kidney tumor segmentation in CT imaging.

Author:

Heller Nicholas1,McSweeney Sean1,Peterson Matthew Thomas1,Peterson Sarah2,Rickman Jack1,Stai Bethany1,Tejpaul Resha1,Oestreich Makinna1,Blake Paul1,Rosenberg Joel1,Moore Keenan3,Walczak Edward1,Rengel Zachary1,Edgerton Zach1,Vasdev Ranveer1,Kalapara Arveen4,Sathianathen Niranjan J.4,Papanikolopoulos Nikolaos1,Weight Christopher J.1

Affiliation:

1. University of Minnesota, Minneapolis, MN;

2. Brigham Young University, Provo, UT;

3. Carleton College, Northfield, MN;

4. University of Melbourne, Melbourne, Australia;

Abstract

626 Background: The 2019 Kidney and Kidney Tumor Segmentation challenge (KiTS19) was an international competition held in conjunction with the 2019 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) and sought to stimulate progress on this automatic segmentation frontier. Growing rates of kidney tumor incidence led to research into the use of artificial inteligence (AI) to radiographically differentiate and objectively characterize these tumors. Automated segmentation using AI objectively quantifies complexity and aggression of renal tumors to better differentiate and describe the tumors for improved treatment decision making. Methods: A training set of over 31,000 CT images from 210 patients with kidney tumors was publicly released with corresponding semantic segmentation masks. 106 teams from five continents used this data to develop automated deep learning systems to predict the true segmentation masks on a test set of an additional 13,500 CT images in 90 patients for which the corresponding ground truth segmentations were kept private. These predictions were scored and ranked according to their average Sørensen-Dice coefficient between kidney and tumor across the 90 test cases. Results: The winning team achieved a Dice of 0.974 for kidney and 0.851 for tumor, approaching the human inter-annotator performance on kidney (0.983) but falling short on tumor (0.923). This challenge has now entered an “open leaderboard” phase where it serves as a challenging benchmark in 3D semantic segmentation. Conclusions: Results of the KiTS19 challenge show deep learning methods are fully capable of reliable segmentation of kidneys and kidney tumors. The KiTS19 challenge attracted a high number of submissions and serves as an important and challenging benchmark in 3D segmentation. The publicly available data will further propel the use of automated 3D segmentation analysis. Fully segmented kidneys and tumors allow for automated calculation of all types of nephrometry, tumor textural variation and discovery of new predictive features important for personalized medicine and accurate prediction of patient relevant outcomes.

Funder

U.S. National Institutes of Health.

Publisher

American Society of Clinical Oncology (ASCO)

Subject

Cancer Research,Oncology

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