Are 2D fingerprints still valuable for drug discovery?

Author:

Gao Kaifu123,Nguyen Duc Duy123,Sresht Vishnu453,Mathiowetz Alan M.453,Tu Meihua453,Wei Guo-Wei12362ORCID

Affiliation:

1. Department of Mathematics

2. Michigan State University

3. USA

4. Pfizer Medicine Design

5. Cambridge

6. Department of Electrical and Computer Engineering

Abstract

Recently, low-dimensional mathematical representations have overshadowed other methods in drug discovery. This work reassesses eight 2D fingerprints on 23 molecular datasets and reveals that they can perform as well as mathematical representations in tasks involving only small molecules.

Funder

Division of Information and Intelligent Systems

National Institutes of Health

Publisher

Royal Society of Chemistry (RSC)

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

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