On the polarization of ligands by proteins
Author:
Affiliation:
1. Department of Chemistry
2. Illinois Institute of Technology
3. Chicago
4. USA
5. Department of Computer Science
6. Department of Applied Mathematics
Abstract
The ligand polarization energy is evaluated for 286 crystallographic complexes from the PDBBind Core Set. It is found to be a substantial and variable highly fraction of the total protein–ligand interaction energy.
Funder
National Institute of General Medical Sciences
Publisher
Royal Society of Chemistry (RSC)
Subject
Physical and Theoretical Chemistry,General Physics and Astronomy
Link
http://pubs.rsc.org/en/content/articlepdf/2020/CP/D0CP00376J
Reference50 articles.
1. Ionizable side chains at catalytic active sites of enzymes
2. W. M. Haynes , CRC Handbook of Chemistry and Physics , CRC Press , 94th edn, 2016
3. Classical Electrostatics in Biology and Chemistry
4. Importance of Substrate and Cofactor Polarization in the Active Site of Dihydrofolate Reductase
5. Substrate polarization in enzyme catalysis: QM/MM analysis of the effect of oxaloacetate polarization on acetyl-CoA enolization in citrate synthase
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