Protein structure refinement using a quantum mechanics-based chemical shielding predictor
Author:
Affiliation:
1. Department of Chemistry
2. University of Copenhagen
3. Copenhagen
4. Denmark
Abstract
We show that a QM-based predictor of a protein backbone and CB chemical shifts is of comparable accuracy to empirical chemical shift predictors after chemical shift-based structural refinement that removes small structural errors (errors in chemical shifts shown in red).
Funder
Lundbeckfonden
Publisher
Royal Society of Chemistry (RSC)
Subject
General Chemistry
Link
http://pubs.rsc.org/en/content/articlepdf/2017/SC/C6SC04344E
Reference43 articles.
1. Fast and Accurate Predictions of Protein NMR Chemical Shifts from Interatomic Distances
2. PPM_One: a static protein structure based chemical shift predictor
3. SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network
4. Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field
5. SHIFTX2: significantly improved protein chemical shift prediction
Cited by 9 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. Highly Accurate Prediction of NMR Chemical Shifts from Low-Level Quantum Mechanics Calculations Using Machine Learning;Journal of Chemical Theory and Computation;2024-02-08
2. Near‐Infrared Bodipy‐Based Molecular Rotors for β‐Amyloid Imaging In Vivo;Advanced Healthcare Materials;2023-08-27
3. DELTA50: A Highly Accurate Database of Experimental 1H and 13C NMR Chemical Shifts Applied to DFT Benchmarking;Molecules;2023-03-07
4. Informing NMR experiments with molecular dynamics simulations to characterize the dominant activated state of the KcsA ion channel;The Journal of Chemical Physics;2021-04-28
5. Informing NMR experiments with molecular dynamics simulations to characterize the dominant activated state of the KcsA ion channel;2020-12-15
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3