FAIR and scalable management of small-angle X-ray scattering data
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Published:2023-03-21
Issue:2
Volume:56
Page:565-575
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ISSN:1600-5767
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Container-title:Journal of Applied Crystallography
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language:
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Short-container-title:J Appl Cryst
Author:
Giess Torsten,Itzigehl Selina,Range Jan,Schömig Richard,Bruckner Johanna R.,Pleiss Jürgen
Abstract
A modular research data management toolbox based on the programming language Python, the widely used computing platform Jupyter Notebook, the standardized data exchange format for analytical data (AnIML) and the generic repository Dataverse has been established and applied to analyze small-angle X-ray scattering (SAXS) data according to the FAIR data principles (findable, accessible, interoperable and reusable). The SAS-tools library is a community-driven effort to develop tools for data acquisition, analysis, visualization and publishing of SAXS data. Metadata from the experiment and the results of data analysis are stored as an AnIML document using the novel Python-native pyAnIML API. The AnIML document, measured raw data and plots resulting from the analysis are combined into an archive in OMEX format and uploaded to Dataverse using the novel easyDataverse API, which makes each data set accessible via a unique DOI and searchable via a structured metadata block. SAS-tools is applied to study the effects of alkyl chain length and counterions on the phase diagrams of alkyltrimethylammonium surfactants in order to demonstrate the feasibility and usefulness of a scalable data management workflow for experiments in physical chemistry.
Funder
Ministry of Science, Research and the Arts Baden-Württemberg Deutsche Forschungsgemeinschaft
Publisher
International Union of Crystallography (IUCr)
Subject
General Biochemistry, Genetics and Molecular Biology
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1. Data collection is your last experiment;Acta Crystallographica Section C Structural Chemistry;2024-06-14 2. FAIR and scalable management of small-angle X-ray scattering data;Journal of Applied Crystallography;2023-03-21
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