Systematic generation of all nonequivalent closest-packed stacking sequences of length N using group theory

Author:

Thompson Richard M.,Downs Robert T.

Abstract

An algorithm has been developed that generates all of the nonequivalent closest-packed stacking sequences of length N. There are 2 N + 2(−1) N different labels for closest-packed stacking sequences of length N using the standard A, B, C notation. These labels are generated using an ordered binary tree. As different labels can describe identical structures, we have derived a generalized symmetry group, QD N × S 3, to sort these into crystallographic equivalence classes. This problem is shown to be a constrained version of the classic three-colored necklace problem.

Publisher

International Union of Crystallography (IUCr)

Subject

General Biochemistry, Genetics and Molecular Biology,General Medicine

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