Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations-Reference-Cited by-同舟云学术

Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations

Published:2015-11-04 Issue:1 Volume:5 Page:
ISSN:2045-2322
Container-title:Scientific Reports
language:en
Short-container-title:Sci Rep

Author:

Aziz Ramy K.,Monk Jonathan M.,Lewis Robert M.,In Loh Suh,Mishra Arti,Abhay Nagle Amrita,Satyanarayana Chitkala,Dhakshinamoorthy Saravanakumar,Luche Michele,Kitchen Douglas B.,Andrews Kathleen A.,Fong Nicole L.,Li Howard J.,Palsson Bernhard O.,Charusanti Pep

Publisher

Springer Science and Business Media LLC

Subject

Multidisciplinary

Link

http://www.nature.com/articles/srep16025.pdf

Reference45 articles.

1. Feist, A. M., Herrgard, M. J., Thiele, I., Reed, J. L. & Palsson, B. O. Reconstruction of biochemical networks in microorganisms. Nature reviews. Microbiology 7, 129–143, 10.1038/nrmicro1949 (2009).

2. Palsson, B. Systems biology: simulation of dynamic network states. (Cambridge University Press, 2011).

3. Licona-Cassani, C., Marcellin, E., Quek, L. E., Jacob, S. & Nielsen, L. K. Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production. Antonie Van Leeuwenhoek 102, 493–502, 10.1007/s10482-012-9783-2 (2012).

4. Lee, S. J. et al. Metabolic engineering of Escherichia coli for enhanced production of succinic acid, based on genome comparison and in silico gene knockout simulation. Appl Environ Microbiol 71, 7880–7887, 10.1128/AEM.71.12.7880-7887.2005 (2005).

5. Nam, H. et al. Network context and selection in the evolution to enzyme specificity. Science 337, 1101–1104, 10.1126/science.1216861 (2012).

Cited by 20 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae;npj Systems Biology and Applications;2022-10-28

2. Computational methods, databases and tools for synthetic lethality prediction;Briefings in Bioinformatics;2022-03-29

3. Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae;2021-09-09

4. Antibiotic resistance: Time of synthesis in a post-genomic age;Computational and Structural Biotechnology Journal;2021

5. Drug repurposing for next-generation combination therapies against multidrug-resistant bacteria;Theranostics;2021