Reconstruction of biochemical networks in microorganisms-Reference-Cited by-同舟云学术

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Reconstruction of biochemical networks in microorganisms

Published:2008-12-31 Issue:2 Volume:7 Page:129-143
ISSN:1740-1526
Container-title:Nature Reviews Microbiology
language:en
Short-container-title:Nat Rev Microbiol

Author:

Feist Adam M.,Herrgård Markus J.,Thiele Ines,Reed Jennie L.,Palsson Bernhard Ø.

Publisher

Springer Science and Business Media LLC

Subject

General Immunology and Microbiology,Microbiology,Infectious Diseases

Link

http://www.nature.com/articles/nrmicro1949.pdf

Reference131 articles.

1. Reed, J. L., Famili, I., Thiele, I. & Palsson, B. O. Towards multidimensional genome annotation. Nature Rev. Genet. 7, 130–141 (2006). A review of the conceptual basis for network reconstruction.

2. Price, N. D., Reed, J. L. & Palsson, B. O. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nature Rev. Microbiol. 2, 886–897 (2004). A comprehensive and succinct review of COBRA methods.

3. Becker, S. A. et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox. Nature Protoc. 2, 727–738 (2007).

4. Feist, A. M. & Palsson, B. O. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nature Biotechnol. 26, 659–667 (2008). A review of the history of applications of the genome-scale E. coli metabolic reconstruction.

5. Papoutsakis, E. T. Equations and calculations for fermentations of butyric acid bacteria. Biotechnol.Bioeng. 26, 174–187 (1984).

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