An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea-Reference-Cited by-同舟云学术

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

Published:2011-12-01 Issue:3 Volume:6 Page:610-618
ISSN:1751-7362
Container-title:The ISME Journal
language:en
Short-container-title:ISME J

Author:

McDonald Daniel,Price Morgan N,Goodrich Julia,Nawrocki Eric P,DeSantis Todd Z,Probst Alexander,Andersen Gary L,Knight Rob,Hugenholtz Philip

Publisher

Springer Science and Business Media LLC

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Link

http://www.nature.com/articles/ismej2011139.pdf

Reference31 articles.

1. Cannone JJ, Subramanian S, Schnare MN, Collett JR, D’Souza LM, Du Y et al. (2002). The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinform 3: 2.

2. Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R . (2010). PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26: 266–267.

3. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK et al. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57: 2259–2261.

4. Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P . (2006). Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283–1287.

5. Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ et al. (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141–D145.

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