Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Published:2017-10-02
Issue:11
Volume:14
Page:1063-1071
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ISSN:1548-7091
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Container-title:Nature Methods
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language:en
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Short-container-title:Nat Methods
Author:
Sczyrba Alexander, Hofmann Peter, Belmann Peter, Koslicki David, Janssen Stefan, Dröge Johannes, Gregor Ivan, Majda Stephan, Fiedler Jessika, Dahms Eik, Bremges Andreas, Fritz Adrian, Garrido-Oter Ruben, Jørgensen Tue Sparholt, Shapiro Nicole, Blood Philip D, Gurevich Alexey, Bai Yang, Turaev Dmitrij, DeMaere Matthew Z, Chikhi Rayan, Nagarajan Niranjan, Quince Christopher, Meyer Fernando, Balvočiūtė Monika, Hansen Lars Hestbjerg, Sørensen Søren J, Chia Burton K H, Denis Bertrand, Froula Jeff L, Wang Zhong, Egan Robert, Don Kang Dongwan, Cook Jeffrey J, Deltel Charles, Beckstette Michael, Lemaitre Claire, Peterlongo Pierre, Rizk Guillaume, Lavenier Dominique, Wu Yu-Wei, Singer Steven W, Jain Chirag, Strous Marc, Klingenberg Heiner, Meinicke Peter, Barton Michael D, Lingner Thomas, Lin Hsin-Hung, Liao Yu-Chieh, Silva Genivaldo Gueiros Z, Cuevas Daniel A, Edwards Robert A, Saha Surya, Piro Vitor C, Renard Bernhard Y, Pop Mihai, Klenk Hans-Peter, Göker Markus, Kyrpides Nikos C, Woyke Tanja, Vorholt Julia A, Schulze-Lefert Paul, Rubin Edward M, Darling Aaron EORCID, Rattei ThomasORCID, McHardy Alice CORCID
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Molecular Biology,Biochemistry,Biotechnology
Reference48 articles.
1. Turaev, D. & Rattei, T. High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved. Curr. Opin. Biotechnol. 39, 174–181 (2016). 2. Mavromatis, K. et al. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat. Methods 4, 495–500 (2007). 3. Lindgreen, S., Adair, K.L. & Gardner, P.P. An evaluation of the accuracy and speed of metagenome analysis tools. Sci. Rep. 6, 19233 (2016). 4. Marx, V. Microbiology: the road to strain-level identification. Nat. Methods 13, 401–404 (2016). 5. Sangwan, N., Xia, F. & Gilbert, J.A. Recovering complete and draft population genomes from metagenome datasets. Microbiome 4, 8 (2016).
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