Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA
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Published:2024-05-30
Issue:1
Volume:11
Page:
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ISSN:2052-4463
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Container-title:Scientific Data
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language:en
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Short-container-title:Sci Data
Author:
Ovaskainen OtsoORCID, Abrego NereaORCID, Furneaux BrendanORCID, Hardwick Bess, Somervuo Panu, Palorinne Isabella, Andrew Nigel R.ORCID, Babiy Ulyana V., Bao Tan, Bazzano Gisela, Bondarchuk Svetlana N.ORCID, Bonebrake Timothy C., Brennan Georgina L., Bret-Harte Syndonia, Bässler Claus, Cagnolo Luciano, Cameron Erin K., Chapurlat Elodie, Creer SimonORCID, D’Acqui Luigi P.ORCID, de Vere NatashaORCID, Desprez-Loustau Marie-Laure, Dongmo Michel A. K.ORCID, Dyrholm Jacobsen Ida B.ORCID, Fisher Brian L.ORCID, Flores de Jesus Miguel, Gilbert Gregory S.ORCID, Griffith Gareth W., Gritsuk Anna A., Gross Andrin, Grudd Håkan, Halme Panu, Hanna Rachid, Hansen Jannik, Hansen Lars Holst, Hegbe Apollon D. M. T.ORCID, Hill Sarah, Hogg Ian D., Hultman JenniORCID, Hyde Kevin D., Hynson Nicole A.ORCID, Ivanova Natalia, Karisto PetteriORCID, Kerdraon Deirdre, Knorre Anastasia, Krisai-Greilhuber Irmgard, Kurhinen Juri, Kuzmina Masha, Lecomte Nicolas, Lecomte ErinORCID, Loaiza Viviana, Lundin Erik, Meire Alexander, Mešić ArminORCID, Miettinen OttoORCID, Monkhause Norman, Mortimer Peter, Müller Jörg, Nilsson R. HenrikORCID, Nonti Puani Yannick C., Nordén Jenni, Nordén BjörnORCID, Paz Claudia, Pellikka Petri, Pereira Danilo, Petch Geoff, Pitkänen Juha-Matti, Popa Flavius, Potter Caitlin, Purhonen JennaORCID, Pätsi Sanna, Rafiq Abdullah, Raharinjanahary Dimby, Rakos NiklasORCID, Rathnayaka Achala R.ORCID, Raundrup Katrine, Rebriev Yury A.ORCID, Rikkinen Jouko, Rogers Hanna M. K., Rogovsky Andrey, Rozhkov Yuri, Runnel KadriORCID, Saarto Annika, Savchenko Anton, Schlegel Markus, Schmidt Niels MartinORCID, Seibold Sebastian, Skjøth CarstenORCID, Stengel Elisa, Sutyrina Svetlana V., Syvänperä Ilkka, Tedersoo LehoORCID, Timm Jebidiah, Tipton LauraORCID, Toju HirokazuORCID, Uscka-Perzanowska Maria, van der Bank Michelle, Herman van der Bank F., Vandenbrink BryanORCID, Ventura StefanoORCID, Vignisson Solvi R., Wang Xiaoyang, Weisser Wolfgang W.ORCID, Wijesinghe Subodini N.ORCID, Joseph Wright S.ORCID, Yang Chunyan, Yorou Nourou S.ORCID, Young Amanda, Yu Douglas W.ORCID, Zakharov Evgeny V., Hebert Paul D. N., Roslin TomasORCID
Abstract
AbstractNovel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.
Publisher
Springer Science and Business Media LLC
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